PRECOG - PREdiction of Clinical Outcomes from Genomic Profiles



PRECOG Datasets

Find further information on the data included in PRECOG and the annotation and analysis steps.

Meta-Z Analysis

Explore associations between gene expression and overall survival collapsed by cancer type.

Individual Datasets Analysis

Examine z-score survival associations in the individual datasets, which are used to compute the meta-Z scores.

iPRECOG - immune PREdiction of Clinical Outcomes from Genomic Profiles



iPRECOG signature matrix

The signature matrix specifies the immune cell type specific genes that underlie iPRECOG.

iPRECOG meta-Z matrix

Explore associations between gene expression and overall survival collapsed by cancer type.

iPRECOG cancer-specific immune fractions

Examine z-score survival associations in the individual datasets, which are used to compute the meta-Z scores.

About

Please find below old PRECOG (and TCGA) data. New studies may have been added to current tables.

File

Description

Size

Probe-level results (including FDRs) for individual studies/subsets in PRECOG, prior to collapsing to gene symbols. See header of files for details

1.28 GB

Matrix of Zscore in PRECOG

7.6 MB

Overall survival times and outcomes for studies (0=ALIVE; DEAD=1 for censoring status)

482 KB

Matrix of gene-level Z-scores for individual studies/subset of studies in PRECOG

23.8 MB

Z-score matrix for TCGA RNA-seq datasets ordered by gene the same as the main PRECOG matrix

12.2 MB


Visualize meta-Z analysis across PRECOG


Columns can be sorted by clicking on the cancer name in the table header.

Z-score to P-value

iPRECOG Signature Matrix - LM22



iPRECOG meta-Z matrix



Z-score to P-value

iPRECOG cancer-specific immune fractions



Individual Datasets Analysis

Visualize Z-scores across individual PRECOG datasets




Z-score to P-value

Visualize survival Z-scores across TCGA RNA-Seq datasets




Z-score to P-value

Contact

agentles at stanford dot edu
amnewman at stanford dot edu
cll at stanford dot edu
sylvia dot plevritis at stanford dot edu
arasha at stanford dot edu