PRECOG - PREdiction of Clinical Outcomes from Genomic Profiles



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PRECOG Datasets

Find further information on the data included in PRECOG and the annotation and analysis steps.

Meta-Z Analysis

Explore associations between gene expression and overall survival collapsed by cancer type.

Individual Datasets Analysis

Examine z-score survival associations in the individual datasets, which are used to compute the meta-Z scores.

iPRECOG - immune PREdiction of Clinical Outcomes from Genomic Profiles



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iPRECOG signature matrix

The signature matrix specifies the immune cell type specific genes that underlie iPRECOG.

iPRECOG meta-Z matrix

Explore associations between gene expression and overall survival collapsed by cancer type.

iPRECOG cancer-specific immune fractions

Examine z-score survival associations in the individual datasets, which are used to compute the meta-Z scores.

About

Please find below old PRECOG (and TCGA) data. New studies may have been added to current tables.

File

Description

Size

Probe-level results (including FDRs) for individual studies/subsets in PRECOG, prior to collapsing to gene symbols. See header of files for details

1.28 GB

Matrix of Z-scores in PRECOG

5.1 MB

Overall survival times and outcomes for studies (0=ALIVE; 1=DEAD for censoring status)

145 KB

Matrix of gene-level Z-scores for individual studies/subset of studies in PRECOG

22.5 MB

Z-score matrix for TCGA RNA-seq datasets ordered by gene the same as the main PRECOG matrix

11.7 MB


Visualize meta-Z analysis across PRECOG


Columns can be sorted by clicking on the cancer name in the table header.

Z-score to P-value

iPRECOG Signature Matrix - LM22



iPRECOG meta-Z matrix



Z-score to P-value

iPRECOG cancer-specific immune fractions



Individual Datasets Analysis

Visualize Z-scores across individual PRECOG datasets




Z-score to P-value

Visualize survival Z-scores across TCGA RNA-Seq datasets




Z-score to P-value

Contact

agentles at stanford dot edu
amnewman at stanford dot edu
cll at stanford dot edu
sylvia dot plevritis at stanford dot edu
arasha at stanford dot edu